Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| SARC | rs11786998 | chr8:129458698 | T/A | 2.99E-13 | 254 | 34 | 23.17 | 3.97 | KM Plot |
| SARC | rs11826296 | chr11:124674924 | C/T | 0 | 258 | 0.57 | 25.6 | 32.5 | KM Plot |
| SARC | rs11843917 | chr13:80014444 | A/C | 0 | 258 | 1.07 | 30.07 | 32.4 | KM Plot |
| SARC | rs11852470 | chr15:81304046 | C/T | 1.24E-5 | 258 | 31.97 | 33.2 | 7.82 | KM Plot |
| SARC | rs11854045 | chr15:81227801 | A/C | 1.85E-5 | 258 | 7.82 | 26.97 | 32.5 | KM Plot |
| SARC | rs11857147 | chr15:58013267 | C/T | 3.42E-12 | 255 | 28.98 | 48.88 | 3.1 | KM Plot |
| SARC | rs1196052 | chr11:64872843 | G/A | 4.51E-8 | 257 | 5.47 | 23.13 | 32.5 | KM Plot |
| SARC | rs12056931 | chr8:129357876 | T/C | 2.22E-13 | 256 | 33.9 | 19.62 | 3.97 | KM Plot |
| SARC | rs12069284 | chr1:204057121 | A/G | 1.88E-11 | 258 | 30.93 | 37.63 | 4.27 | KM Plot |
| SARC | rs1209621 | chr11:64870779 | T/C | 6.09E-8 | 256 | 5.47 | 26.53 | 32.4 | KM Plot |
| SARC | rs1211975 | chr11:64885524 | T/C | 4.89E-8 | 256 | 5.47 | 23.13 | 32.6 | KM Plot |
| SARC | rs12168259 | chr22:42459107 | C/T | 0 | 258 | 31.97 | 29.8 | 1.07 | KM Plot |
| SARC | rs12172202 | chr22:38931537 | G/A | 4.38E-5 | 256 | 33.18 | 25.57 | 18.33 | KM Plot |
| SARC | rs12193474 | chr6:133186168 | T/C | 1.63E-6 | 254 | 33.17 | 30.73 | 14 | KM Plot |
| SARC | rs12193642 | chr6:133200185 | G/A | 3.61E-6 | 252 | 32.45 | 31.57 | 14.95 | KM Plot |